Protein Domain Finder Tool

Submit protein sequences up to 10 or a whole protein custom database up to 16 mb in size and scan it against a motif or a combination of motifs of your choice.

Protein domain finder tool. Protein sequence analysis workbench of secondary structure prediction methods. The identification of domains that occur within proteins can therefore provide insights into their function. Pfam also generates higher level groupings of related entries known as clans.

Search for conserved domains within a protein or coding nucleotide sequence. The motif or collection of motifs can be a prosite motif a custom pattern or a combination of any of the latter. Cdvist comprehensive domain visualization tool cdvist is a sequence based protein domain search tool.

A clan is a collection of pfam entries which are related by similarity of sequence structure or profile hmm. Prosite consists of documentation entries describing protein domains families and functional sites as well as associated patterns and profiles to identify them more. One line per protein other options.

Protein variation effect analyzer a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein. At most 10 000 sequences and 4 000 000 amino acids per submission. References commercial users.

Each sequence not more than 8 000 amino acids. The protein database is a collection of sequences from several sources including translations from annotated coding regions in genbank refseq and tpa as well as records from swissprot pir prf and pdb. We combine protein signatures from a number of member databases into a single searchable resource capitalising on their individual strengths to produce a powerful integrated database and diagnostic tool.

For multiple protein queries use batch cd search. Enter protein or nucleotide query as accession gi or sequence in fasta format. Sars cov 2 relevant prosite motifs.